Chapter 2 Theoretical framework
2.2 Key concepts
ALLEN, J. F.; HAYES, P. J. Moments and points in an interval-based temporal logic. Comput. Intell., v. 5, n. 4, p. 225-238, 1990. ISSN 0824-7935.
ALMEIDA, M. B. Um modelo baseado em ontologias para representação da memória organizacional. 2006. 321 (PhD). Escola de Ciência da Informação, UFMG, Belo Horizonte. ALMEIDA, M. B. A proposal to evaluate ontology content. Applied Ontology, v. 4, n. 3-4, p. 245-265, 2009. ISSN 1570-5838.
ALMEIDA, M. B.; ANDRADE, A. Q. Information, Reality and Epistemology: An Ontological Take. 3rd Workshop Ontologies in Biomedicine and Life Sciences (OBML), 2011, Berlim, Germany. Universitaet Leipzig.
ALMEIDA, M. B.; ANDRADE, A. Q.; MENDONÇA, F. M. Epistemology and medical records: an applied evaluation. ONTOBRAS-MOST 2012. Recife, Brazil 2012.
ALMEIDA, M. B. et al. The Blood Ontology: an ontology in the domain of hematology. ICBO 2011, 2011a, Buffalo.
ALMEIDA, M. B.; SOUZA, R. R.; COELHO, K. C. Estudo exploratório sobre ontologias aplicadas a modelos de sistemas de informação: perspectivas de pesquisa em Ciência da Informação. IV Encontro Ibérico EDIBCIC 2009. Coimbra, Portugual 2009. ALMEIDA, M. B.; SOUZA, R. R.; FONSECA, F. Semantics in the Semantic Web: a critical evaluation. Knowledge Organization Journal, 2011b.
ANDRADE, A. Q.; ALMEIDA, M. B. A realism-based analysis of the OpenEHR entry model. Proceedings of the MIXHS'11, 2011a, Glasgow, Scotland, UK. ACM. p.51-58.
ANDRADE, A. Q.; ALMEIDA, M. B. Realist representation of the medical practice: an ontological and epistemological analysis. Proceedings of the 4th Ontobras, 2011b, Gramado, Brazil.
ANDRADE, A. Q.; ALMEIDA, M. B.; SCHULZ, S. Revisiting ontological foundations of the OpenEHR Entry Model. Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012a, Graz, Austria.
ANDRADE, A. Q. et al. Process attributes in bio-ontologies. Bmc Bioinformatics, v. 13, n. 1, p. 217, Aug 28 2012b. ISSN 1471-2105 (Electronic)
1471-2105 (Linking).
ANDRADE, A. Q. et al. Requirements for semantic biobanks. Stud Health Technol Inform, v. 180, p. 569-73, 2012c. ISSN 0926-9630 (Print)
0926-9630 (Linking).
ASHBURNER, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics, v. 25, n. 1, p. 25-9, May 2000. ISSN 1061-4036 (Print)
1061-4036 (Linking).
BAADER, F. et al., Eds. The Description Logic Handbook: Theory, Implementation and Applications. New York: Cambridge University Press, p.555ed. 2003.
BARD, J.; RHEE, S. Y.; ASHBURNER, M. An ontology for cell types. Genome Biol, v. 6, n. 2, p. R21, 2005. ISSN 1465-6914 (Electronic)
1465-6906 (Linking).
BATCHELOR, C.; HASTINGS, J.; STEINBECK, C. Processes and properties. In: SHAH, N.;SANSONE, S.-A., et al, Proceedings of the BioOntologies SIG at ISMB/ECCB 2011, 2011, Vienna, Austria. 15-16th July.
BAWDEN, D. The three worlds of health information. Journal of Information Science, v. 28, n. 1, p. 51-62, 2002. ISSN 0165-5515. Disponível em: < <Go to ISI>://000174166300006 >. BEALE, T.; HEARD, S. Architecture Overview. OpenEHR Foundation, p.87. 2007a
BEALE, T.; HEARD, S. An ontology-based model of clinical information. Stud Health Technol Inform, v. 129, n. Pt 1, p. 760-4, 2007b. ISSN 0926-9630 (Print)
0926-9630 (Linking).
BEIßWANGER, E. et al. BioTop: An Upper Domain Ontology for the Life Sciences - A Description of its Current Structure, Contents, and Interfaces to OBO Ontologies. Applied Ontology, v. 3, n. 4, p. 205-212, December 2008.
BERNERS-LEE, T.; HENDLER, J.; LASSILA, O. The Semantic Web - A new form of Web content that is meaningful to computers will unleash a revolution of new possibilities. Scientific American, v. 284, n. 5, p. 34-38, May 2001. ISSN 0036-8733. Disponível em: < <Go to ISI>://000168217200023 >.
BHOGAL, J.; MACFARLANE, A.; SMITH, P. A review of ontology based query expansion. Information Processing & Management, v. 43, n. 4, p. 866-886, 2007. ISSN 0306- 4573. Disponível em: < http://www.sciencedirect.com/science/article/pii/S0306457306001476 >.
BICKLEY, L. S.; SZILAGYI, P. G. Bates' Guide to Physical Examination and History Taking. 10th Edition. Lippincott Williams & Wilkins, 2009.
BLOBEL, B.; ENGEL, K.; PHAROW, P. Semantic interoperability - HL7 version 3 compared to advanced architecture standards. Methods of Information in Medicine, v. 45, n. 4, p. 343-353, 2006. ISSN 0026-1270. Disponível em: < <Go to ISI>://WOS:000239824800003 >. BODENREIDER, O.; OLKEN, F. Ontology Summit 2007 Communiqué. 2007. Disponível em: < http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2007_Communique >. Acesso em: 4th January.
BODENREIDER, O.; SMITH, B.; BURGUN, A. The Ontology-Epistemology Divide:A Case Study in Medical Terminology. In: VARZI, A. e VIEU, L., 3rd Conference on Formal
Ontology in Information Systems (FOIS 2004), 2004, Turin.
BODENREIDER, O. et al. Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artificial Intelligence in Medicine, v. 39, n. 3, p. 183-195, 2007. ISSN 0933-3657. Disponível em: < <Go to ISI>://WOS:000246657200002 >.
BODENREIDER, O.; STEVENS, R. Bio-ontologies: current trends and future directions. Briefings in Bioinformatics, v. 7, n. 3, p. 256-274, 2006. ISSN 1467-5463. Disponível em: < <Go to ISI>://WOS:000240964500005 >.
BREWSTER, C.; O'HARA, K. Knowledge representation with ontologies: Present challenge - Future possibilities. International Journal of Human-Computer Studies, v. 65, n. 7, p. 563- 568, Jul 2007. ISSN 1071-5819. Disponível em: < <Go to ISI>://000247427700001 >.
CAMPBELL, J. R. et al. Phase II evaluation of clinical coding schemes: completeness, taxonomy, mapping, definitions, and clarity. CPRI Work Group on Codes and Structures. J Am Med Inform Assoc, v. 4, n. 3, p. 238-51, May-Jun 1997. ISSN 1067-5027 (Print)
1067-5027 (Linking).
CEN/ISO EN13606 INFORMATION SITE. The CEN/ISO EN13606 Standard. 2009. Disponível em: < http://www.en13606.org/ >. Acesso em: 6th March.
CEUSTERS, W. et al. An Evolutionary Approach to Realism-based Adverse Event Representations. Methods of Information in Medicine, v. 50, n. 1, p. 62-73, 2011. ISSN 0026-1270. Disponível em: < <Go to ISI>://WOS:000286799500008 >.
CEUSTERS, W.; ELKIN, P.; SMITH, B. Negative findings in electronic health records and biomedical ontologies: a realist approach. Int J Med Inform, v. 76 Suppl 3, p. S326-33, Dec 2007. ISSN 1872-8243 (Electronic)
1386-5056 (Linking).
CEUSTERS, W.; SMITH, B. Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. Journal of Web Semantics, v. 4, n. 3, p. 229-236, 2006. ISSN 1570-8268. Disponível em: < <Go to ISI>://WOS:000247054000009 >.
CEUSTERS, W.; SMITH, B.; GOLDBERG, L. A terminological and ontological analysis of the NCI Thesaurus. Methods Inf Med, v. 44, n. 4, p. 498-507, 2005. ISSN 0026-1270 (Print) 0026-1270 (Linking).
CHANDRASEKARAN, B.; JOSEPHSON, J. R.; BENJAMINS, V. R. What are ontologies, and why do we need them? Ieee Intelligent Systems & Their Applications, v. 14, n. 1, p. 20-26, Jan-Feb 1999. ISSN 1094-7167. Disponível em: < <Go to ISI>://000078503400006 >.
CIMINO, J. J. Desiderata for controlled medical vocabularies in the twenty-first century. Methods Inf Med, v. 37, n. 4-5, p. 394-403, Nov 1998. ISSN 0026-1270 (Print)
CIMINO, J. J. In defense of the Desiderata. J Biomed Inform, v. 39, n. 3, p. 299-306, Jun 2006. ISSN 1532-0480 (Electronic)
1532-0464 (Linking).
CIMINO, J. J.; ZHU, X. The practical impact of ontologies on biomedical informatics. Methods of Information in Medicine, v. 45, p. 124-135, 2006. ISSN 0026-1270. Disponível em: < <Go to ISI>://WOS:000242775200022 >.
CONNORS, J. M.; BRITTON, K. A. A Bloody Mystery. October 15, 2009 2009. Disponível em: < http://www.nejm.org/doi/full/10.1056/NEJMimc0902429 >. Acesso em: December 28th. CONSELHO FEDERAL DE MEDICINA. Resolução 1638/2002. CONSELHO FEDERAL DE MEDICINA 2002.
COSTA, C. M.; MENARGUEZ-TORTOSA, M.; FERNANDEZ-BREIS, J. T. Clinical data interoperability based on archetype transformation. J Biomed Inform, v. 44, n. 5, p. 869-80, Oct 2011. ISSN 1532-0480 (Electronic)
1532-0464 (Linking).
COURTOT, M. et al. MIREOT: The minimum information to reference an external ontology term. Applied Ontology, v. 6, n. 1, p. 23-33, 2011.
CREATH, R.; FRIEDMAN, M. The Cambridge companion to Carnap. Cambridge University Press, 2007. 371.
CROSS, J. H. et al. Clinical examination compared with anthropometry in evaluating nutritional status. Arch Dis Child, v. 72, n. 1, p. 60-1, Jan 1995. ISSN 1468-2044 (Electronic) 0003-9888 (Linking).
DE ROOS, A. A critical evaluation of HL7 version 3 as an interoperable EHR standard 2007.
DOLIN, R. H. et al. HL7 Clinical Document Architecture, Release 2. Journal of the American Medical Informatics Association, v. 13, n. 1, p. 30-39, 2006. ISSN 1067-5027. Disponível em: < <Go to ISI>://WOS:000234724000006 >.
DRUMMOND, N. et al. Putting OWL in Order: Patterns for sequences in OWL. In: GRAU, B. C.;HITZLER, P., et al, OWL Experiences and Directions (OWLEd 2006), 2006, Athens Georgia (USA).
EUZENAT J. Towards a principled approach to semantic interoperability. IJCAI-01 Workshop on Ontologies and Information Sharing, 2001, Seattle, USA. August 4-5. p.19-25. FERANTI, J. M. et al. The clinical document architecture and the continuity of care record: A critical analysis. Journal of the American Medical Informatics Association, v. 13, n. 3, p. 245-252, 2006. ISSN 1067-5027. Disponível em: < <Go to ISI>://WOS:000238264200002 >. FONSECA, F. The double role of ontologies in information science research. Journal of the American Society for Information Science and Technology, v. 58, n. 6, p. 786-793, 2007. ISSN 1532-2882. Disponível em: < <Go to ISI>://WOS:000246379800003 >.
FONSECA, F.; MARTIN, J. Play as the Way Out of the Newspeak-Tower of Babel Dilemma in Data Modeling. ICIS 2005, 2005a.
FONSECA, F.; MARTIN, J. Beyond Newspeak: three arguments for the persistence of the informal in the creation and use of computational ontologies. Knowledge Management Research & Practice, v. 7, n. 3, p. 196-205, 2009. ISSN 1477-8238. Disponível em: < <Go to ISI>://WOS:000282845600003 >.
FONSECA, F. T.; MARTIN, J. E. Toward an alternative notion of information systems ontologies: Information engineering as a hermeneutic enterprise. Journal of the American Society for Information Science and Technology, v. 56, n. 1, p. 46-57, Jan 2005b. ISSN 1532-2882. Disponível em: < <Go to ISI>://000225799300006 >.
FREITAS, F.; SCHULZ, S.; MORAES, E. Survey of current terminologies and ontologies in biology and medicine. Electronic Journal of Communication Information and Innovation in Health, v. 3, n. 1, p. 7-18, Mar, 2009 2009.
GALTON, A.; MIZOGUCHI, R. The water falls but the waterfall does not fall: New perspectives on objects, processes and events. Applied Ontology, v. 4, n. 2, p. 71-107, 2009 2009. ISSN 1570-5838. Disponível em: < <Go to ISI>://WOS:000207936600001 >. GANGEMI, A. et al. Sweetening ontologies with DOLCE. Knowledge Engineering and Knowledge Management, Proceedings, v. 2473, p. 166-181, 2002. ISSN 0302-9743. Disponível em: < <Go to ISI>://WOS:000189412200018 >.
GARDE, S. et al. Expressing clinical data sets with openEHR archetypes: A solid basis for ubiquitous computing. International Journal of Medical Informatics, v. 76, p. S334-S341, 2007. ISSN 1386-5056. Disponível em: < <Go to ISI>://WOS:000207730900003 >.
GIL, A. C. Como Elaborar Projetos de Pesquisa. São Paulo: Atlas, 1991.
GOLDFAIN, A. et al. Vital Sign Ontology. In: SHAH, N.;SANSONE, S.-A., et al, Proceedings of the BioOntologies SIG at ISMB/ECCB 2011, 2011, Vienna, Austria. 15-16th July.
GÓMEZ-PÉREZ, A.; FERNÁNDEZ-LÓPEZ, M.; CORCHO, O. Ontological engineering : with examples from the areas of knowledge management, e-commerce and the semantic web. London: Springer-Verlag, 2004.
GRENON, P.; SMITH, B.; GOLDBERG, L. Biodynamic ontology: applying BFO in the biomedical domain. In: PISANELLI, D. M. (Ed.). Ontologies in Medicine. Amsterdam: IOS Press, 2004. p.20-38.
GREWE, N. A Generic Reification Strategy for n-ary Relations in DL. OBML 2010 - 2nd Workshop of Ontologies in Biomedicine and Life Sciences. Mannhein, Germany 2010.
GREWE, N. Relating Processes and Events for Granularity-neutral Modeling. In: SHAH, N.;SANSONE, S.-A., et al, Proceedings of the BioOntologies SIG at ISMB/ECCB 2011, 2011, Vienna, Austria. 15-16th July 2011.
GRUBER, T. R. Toward principles for the design of ontologies used for knowledge sharing. International Journal of Human-Computer Studies, v. 43, n. 5-6, p. 907-928, Nov-Dec 1995. ISSN 1071-5819. Disponível em: < <Go to ISI>://A1995TY52900017 >.
GRUNINGER, M. et al. Ontology Summit 2007 - Ontology, taxonomy, folksonomy: Understanding the distinctions. Applied Ontology, v. 3, n. 3, p. 191-200, 2008.
GRUNINGER, M.; FOX, M. S. Methodology for the Design and Evaluation of Ontologies. Workshop on Basic Ontological Issues in Knowledge Sharing, IJCAI-95. Montreal 1995. GUARINO, N. Formal ontology, conceptual analysis and knowledge representation. International Journal of Human-Computer Studies, v. 43, n. 5-6, p. 625-640, Nov-Dec 1995. ISSN 1071-5819. Disponível em: < <Go to ISI>://A1995TY52900002 >.
GUARINO, N. Formal Ontology and Information Systems. In: GUARINO, N., FOIS‘98, 1998, Trento, Italy. IOS Press, november 20, 2007. p.3-15.
GUARINO, N.; POLI, R. The role of formal ontology in the information technology. International Journal of Human-Computer Studies, v. 43, n. 5-6, p. 623-624, 1995. ISSN 1071-5819. Disponível em: < <Go to ISI>://WOS:A1995TY52900001 >.
GUARINO, N.; WELTY, C. Evaluating ontological decisions with ontoclean. Communications of the Acm, v. 45, n. 2, p. 61-65, 2002. ISSN 0001-0782. Disponível em: < <Go to ISI>://WOS:000173489300022 >.
HARE, M. et al. Activating event knowledge. Cognition, v. 111, n. 2, p. 151-167, 2009. ISSN 0010-0277. Disponível em: < <Go to ISI>://WOS:000265571100001 >.
HILL, D. P. et al. Gene Ontology annotations: what they mean and where they come from. Bmc Bioinformatics, v. 9, 2008. ISSN 1471-2105. Disponível em: < <Go to ISI>://WOS:000259023600002 >.
HIRSH, J. et al. American Heart Association/American College of Cardiology Foundation guide to warfarin therapy. Circulation, v. 107, n. 12, p. 1692-711, Apr 1 2003. ISSN 1524- 4539 (Electronic)
0009-7322 (Linking).
HITZLER, P. et al., Eds. OWL 2 Web Ontology Language Primer W3C Recommendationed. 2009.
HJORLAND, B. Semantics and knowledge organization. Annual Review of Information Science and Technology, v. 41, p. 367-405, 2007. ISSN 0066-4200. Disponível em: < <Go to ISI>://000242813600009 >.
HL7. HL7 V3 Reference Information Model: RIM Version V 02-32 September 2010. Membership Normative Ballot. 08/22/2010 8:35 PM 2010. Disponível em: < http://www.hl7.org/v3ballot2010SEP/html/welcome/environment/index.htm >. Acesso em: 20 outubro.
HOEHNDORF, R.; DUMONTIER, M.; GKOUTOS, G. V. Evaluation of research in biomedical ontologies. Briefings in Bioinformatics, September 8, 2012 2012. Disponível em: < http://bib.oxfordjournals.org/content/early/2012/09/07/bib.bbs053.abstract >.
HORRIDGE, M. et al. The Manchester OWL syntax. Proc. of the 2006 OWL Experiences and Directions Workshop (OWL-ED2006). Athens, Georgia: CEUR 2006.
HORROCKS, I. et al. SWRL: A Semantic Web Rule Language Combining OWL and RuleML. 2004. Disponível em: < http://www.w3.org/Submission/SWRL/ >. Acesso em: June 6th.
HOVENGA, E.; GARDE, S.; HEARD, S. Nursing constraint models for electronic health records: a vision for domain knowledge governance. Int J Med Inform, v. 74, n. 11-12, p. 886-98, Dec 2005. ISSN 1386-5056 (Print)
1386-5056 (Linking).
IHTSDO. 2012. Disponível em: < http://www.ihtsdo.org/snomed-ct/ >. Acesso em: November 20th.
JANSEN, L.; SCHULZ, S. Grains, components and mixtures in biomedical ontologies. J Biomed Semantics, v. 9, n. 2, p. 9, 2011a. ISSN 2041-1480 (Electronic).
JANSEN, L.; SCHULZ, S. The Ten Commandments of Ontological Engineering. In: HERRE, H.;HOEHNDORF, R., et al, Proceedings of the 3rd Workshop Ontologies in Biomedicine and Life Sciences, 2011b, Berlim, Germany. Universitaet Leipzig.
JASPER, R.; USCHOLD, M. A framework for understanding and classifying ontology applications. 1999. Disponível em: < citeulike-article-id:7749652
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.83.7541 >. Acesso em: 18th February.
JETTE, N. et al. The Development, Evolution, and Modifications of ICD-10 Challenges to the International Comparability of Morbidity Data. Medical Care, v. 48, n. 12, p. 1105-1110, 2010. ISSN 0025-7079. Disponível em: < <Go to ISI>://WOS:000284380200009 >.
KALRA, D. Electronic health record standards. Methods of Information in Medicine, v. 45, p. 136-144, 2006. ISSN 0026-1270. Disponível em: < <Go to ISI>://000242775200023 >. KAMINKER, D.; CAMPOS, F. HL7 V3 Intro: Guide to the Standard. In: SHAFAMAN, M.;KAMINKER, D., et al (Ed.). HL7 E-Learning Course, 2008.
KLEIN, G. O.; SMITH, B. Concept Systems and Ontologies: Recommendations for Basic Terminology. Information and Media Technologies, v. 5, n. 2, p. 720-728, 2010.
KNUBLAUCH, H.; HENDLER, J. A.; IDEHEN, K. SPIN - Overview and Motivation. 2011. Disponível em: < http://www.w3.org/Submission/spin-overview/ >. Acesso em: June 6th. KÖHLER, J.; PHILIPPI, S.; LANGE, M. SEMEDA: ontology based semantic integration of biological databases. Bioinformatics, v. 19, n. 18, p. 2420-2427, December 12, 2003 2003. Disponível em: < http://bioinformatics.oxfordjournals.org/content/19/18/2420.abstract >. KUTZ, O. et al. Hyperontology for the Biomedical Ontologist: A sketch and some examples. Proceedings of the Workshop on Working with Multiple Biomedical Ontologies (co-located with ICBO 2011), 2011, Buffalo, USA.
LENAT, D. B. Cyc - a Large-Scale Investment in Knowledge Infrastructure. Communications of the Acm, v. 38, n. 11, p. 33-38, 1995. ISSN 0001-0782. Disponível em: < <Go to ISI>://WOS:A1995TC17500013 >.
LORD, P.; STEVENS, R. Adding a little reality to building ontologies for biology. PLoS One, v. 5, n. 9, p. e12258, 2010. ISSN 1932-6203 (Electronic)
1932-6203 (Linking).
MARTÍNEZ-COSTA, C. et al. Towards the harmonization of Clinical Information and Terminologies by Formal Representation (accepted for presentation). 13th International HL7 Interoperability Conference (IHIC), 2012, Viena, Austria. 26-27th September.
MARTINEZ-COSTA, C.; MENARGUEZ-TORTOSA, M.; FERNANDEZ-BREIS, J. T. An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes. J Biomed Inform, v. 43, n. 5, p. 736-46, Oct 2010. ISSN 1532-0480 (Electronic)
1532-0464 (Linking).
MCCARTHY, J. Programs with Common Sense. Teddington Conference on the Mechanization of Thought Processes, 1959, London. Her Majesty's Stationery Office.
MCCARTHY, J. Circumscription - a Form of Non-Monotonic Reasoning. Artificial Intelligence, v. 13, n. 1-2, p. 27-39, 1980. ISSN 0004-3702. Disponível em: < <Go to ISI>://WOS:A1980JW24000003 >.
MCCARTHY, J.; HAYES, P. Some Philosophical Problems from the Standpoint of Artificial Intelligence. Machine Intelligence, v. 4, p. 463-502, 1969. Disponível em: < http://www- formal.stanford.edu/jmc/mcchay69.pdf >.
MERRILL, G. H. Concepts and synonymy in the UMLS Metathesaurus. J Biomed Discov Collab, v. 4, p. 7, 2009. ISSN 1747-5333 (Electronic)
1747-5333 (Linking).
MERRILL, G. H. Ontological realism: Methodology or misdirection? Applied Ontology, v. 5, p. 79-108, 2010a. ISSN DOI 10.3233/AO-2010-0076.
MERRILL, G. H. Realism and reference ontologies:Considerations, reflections and problems. Applied Ontology, v. 5, p. 189–221, 2010b.
NEHTA. Review of shared electronic health record standards. National E-Health Transition Authority Ltd. 2006
NIINILUOTO, I. Critical scientific realism. New York: Oxford University Press, 1999. 355. NIRENBURG, S.; WILKS, Y. What's in a symbol: ontology, representation and language. Journal of Experimental & Theoretical Artificial Intelligence, v. 13, n. 1, p. 9-23, 2001. ISSN 0952-813X. Disponível em: < <Go to ISI>://WOS:000168648600002 >.
NOY, N. F. et al. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research, v. 37, p. W170-W173, 2009. ISSN 0305-1048. Disponível em: < <Go to ISI>://WOS:000267889100031 >.
OBO PHENOTYPE GROUP. PATO - Phenotypic Quality Ontology. Disponível em: < http://www.bioontology.org/wiki/index.php/PATO:Main_Page >. Acesso em: 2nd january. OPENEHR FOUNDATION. OpenEHR. 2007. Disponível em: < http://www.openehr.org >. Acesso em: September 18th.
OPENEHR FOUNDATION. Clinical Knowledge Manager. 2011. Disponível em: < http://www.openehr.org/knowledge/ >. Acesso em: June 19th.
PADILHA, A. R. S. PORTARIA Nº 2.073, DE 31 DE AGOSTO DE 2011. MINISTÉRIO DA SAÚDE. Brasília 2011.
PARK, J.; RAM, S. Information systems interoperability: What lies beneath? Acm Transactions on Information Systems, v. 22, n. 4, p. 595-632, 2004. ISSN 1046-8188. Disponível em: < <Go to ISI>://WOS:000224839300004 >.
POIRIER, P. Adiposity and cardiovascular disease: are we using the right definition of obesity? Eur Heart J, v. 28, n. 17, p. 2047-8, Sep 2007. ISSN 0195-668X (Print)
0195-668X (Linking).
POLI, R. Ontology: The Categorial Stance. In: POLI, R. e SEIBT, J. (Ed.). Theory and Applications of Ontology: Philosophical Perspectives. 1st. Berlin: Springer, 2010. p.1-22. POLI, R. et al. Formal and Descriptive Ontologists. 11th February 2011 2002. Disponível em: < http://www.formalontology.com/essays/table-ontologists.pdf >. Acesso em: 16th March. POPPER, K. Three Worlds. The Tanner Lectures on Human Values. 2011 1978.
RAPAPORT, W. J. Holism, conceptual-role semantics, and syntactic semantics. Minds and Machines, v. 12, n. 1, p. 3-59, Feb 2002. ISSN 0924-6495. Disponível em: < <Go to ISI>://000173210100001 >.
RAPAPORT, W. J. What did you mean by that? Misunderstanding, negotiation, and syntactic semantics. Minds and Machines, v. 13, n. 3, p. 397-427, 2003. ISSN 0924-6495. Disponível em: < <Go to ISI>://WOS:000183475000003 >.
RAPAPORT, W. J. Intensionality vs. Intentionality. 15 April 2009 2009. Disponível em: < http://www.cse.buffalo.edu/~rapaport/intensional.html >. Acesso em: 2nd March.
RECTOR, A. Knowledge Driven Software and "Fractal Tailoring": Ontologies in development environments for clinical systems. Proceeding of the 2010 conference on Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010). Toronto, Canada: IOS Press 2010.
RECTOR, A.; ROGERS, J. Ontological and practical issues in using a description logic to represent medical concept systems: Experience from GALEN. Reasoning Web, v. 4126, p. 197-231, 2006. ISSN 0302-9743. Disponível em: < <Go to ISI>://WOS:000240539300009 >. RECTOR, A.; ROGERS, J.; BITTNER, T. Granularity, scale and collectivity: When size does and does not matter. Journal of Biomedical Informatics, v. 39, n. 3, p. 333-349, Jun 2006. ISSN 1532-0464. Disponível em: < <Go to ISI>://000237980400010 >.
RECTOR, A. L.; QAMAR, R.; MARLEY, T. Binding ontologies and coding systems to electronic health records and messages. Applied Ontology, v. 4, n. 1, p. 51-69, 2009 2009. ISSN 1570-5838. Disponível em: < <Go to ISI>://WOS:000207936500005 >.
ROBINSON, P. N.; MUNDLOS, S. The human phenotype ontology. Clinical Genetics, v. 77, n. 6, p. 525-34, Jun 2010. ISSN 1399-0004 (Electronic)
0009-9163 (Linking).
SANTOS, M. R. Sistema de registro eletrônico de saúde baseado na norma ISO 13606: aplicações na Secretaria de Estado de Saúde de Minas Gerais. 2011. 175 (Doctoral degree). Escola de Ciência da Informação, Universidade Federal de Minas Gerais, Belo Horizonte.
SANTOS, M. R.; BAX, M. P.; KALRA, D. Building a logical EHR architecture based on ISO 13606 standard and semantic web technologies. Stud Health Technol Inform, v. 160, n. Pt 1, p. 161-5, 2010. ISSN 0926-9630 (Print)
0926-9630 (Linking).
SANTOS, M. R.; BAX, M. P.; KALRA, D. Dealing with the Archetypes Development Process for a Regional EHR System. Applied Clinical Informatics, v. 3, n. 3, p. 258-275, 2012. SCHADOW, G.; MEAD, C. N.; WALKER, D. M. The HL7 reference information model under scrutiny. Stud Health Technol Inform, v. 124, p. 151-6, 2006. ISSN 0926-9630 (Print) 0926-9630 (Linking).
SCHAFFER, J. The Metaphysics of Causation. 2007. Disponível em: < http://plato.stanford.edu/entries/causation-metaphysics/ >. Acesso em: 15th of January. SCHEUERMANN, R. H.; CEUSTERS, W.; SMITH, B. Toward an ontological treatment of disease and diagnosis. Summit on Translat Bioinforma, v. 2009, p. 116-20, 2009. ISSN 2153-6430 (Electronic)
2153-6430 (Linking).
SCHLOEFFEL, P. et al. The relationship between CEN 13606, HL7, and openEHR. Ocean Informatics Pty Ltd. Sydney, Australia. 2006
SCHULZ, S. et al. Alignment of the UMLS semantic network with BioTop: methodology and assessment. Bioinformatics, v. 25, n. 12, p. i69-76, Jun 15 2009a. ISSN 1367-4811 (Electronic)
1367-4803 (Linking).
SCHULZ, S.; CORNET, R. SNOMED CT‟s Ontological Commitment. International Conference on Biomedical Ontology. 2009
SCHULZ, S.; HAHN, U. Part-whole representation and reasoning in formal biomedical ontologies. Artificial Intelligence in Medicine, v. 34, n. 3, p. 179-200, Jul 2005. ISSN 0933- 3657. Disponível em: < <Go to ISI>://000230983700001 >.
SCHULZ, S.; HAHN, U. Towards the ontological foundations of symbolic biological theories. Artif Intell Med, v. 39, n. 3, p. 237-50, Mar 2007. ISSN 0933-3657 (Print)
SCHULZ, S.; KARLSSON, D. Records and situations. Integrating contextual aspects in clinical ontologies. In: SHAH, N.;SANSONE, S., et al, Proceedings of the BioOntologies SIG at ISMB/ECCB 2011, 2011, Vienna, Austria. p.49-52.
SCHULZ, S.; KLEIN, G. O. SNOMED CT – advances in concept mapping, retrieval, and ontological foundations. Selected contributions to the Semantic Mining Conference on SNOMED CT (SMCS 2006). BMC Medical Informatics and Decision Making, v. 8, n. S1, 2008.
SCHULZ, S.; KUMAR, A.; BITTNER, T. Biomedical ontologies: What part-of is and isn't. Journal of Biomedical Informatics, v. 39, n. 3, p. 350-361, Jun 2006. ISSN 1532-0464. Disponível em: < <Go to ISI>://000237980400011 >.
SCHULZ, S.; MARKO, K.; HAHN, U. Spatial location and its relevance for terminological inferences in bio-ontologies. Bmc Bioinformatics, v. 8, p. 12, Apr 2007. ISSN 1471-2105. Disponível em: < <Go to ISI>://000246973600001 >.
SCHULZ, S.; MARKÓ, K.; SUNTISRIVARAPORN, B. Formal representation of complex SNOMED CT expressions. BMC Medical Informatics and Decision Making, v. 8(Suppl 1), n. S9, 2008.
SCHULZ, S. et al. Bridging the semantics gap between terminologies, ontologies, and